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The Informatics Axon News - Headlines

 

Joey Jo-Jo jr. Shabbadu
5 November 2009

One of the most prevalent assumptions we make as neuroscientists is that the brain communicates using a binary code. That is, either a neuron fires and action potential and passes along information (1), or it doesn’t (0). Presumably, information is stored and conveyed by the pattern of neurons that are active at any particular time. For example, let’s say we have 10 neurons. Neurons 2,4,6 and 8 represent an apple, while neurons 3,5,6 and 9 represent a banana. If 2,4,6,and 8 are active at one time point, we identify an apple. If only neurons 2,4 and 8 fire, we would probably still identify an apple due to activation of the entire network via pattern completion. But the point is a neuron has to fire an action potential in order to convey information. Right?


Flu Season
Jeremy Biane
2 April 2010

The common cold can strike at any time. But there are certain periods throughout the year where the prevalence of illness goes way up. These peak times usually come during the cold winter months, which over the years has led to much popular speculation about flu transmission. Probably the most repeated adage is that the cold weather somehow makes us susceptible to catching a cold (I mean, it is called a cold, after all). Braving the weather without the proper clothing??? Boy, you’ll get sick. Going outside with wet hair??? You’re done for. But with just a little knowledge of microbiology and physiology, the logic of these beliefs start to break down. Sure, protecting yourself from the elements is sound general advice, but just how the heck does exposure to the cold stir up those flu virons within?



Jeremy Biane
29 October 2009

One of the central predictions of the Hebbian theory of learning is that memories are stored by the same neurons that were engaged during learning. Although Hebb published his famous postulate, “neurons that fire together, wire together” (paraphrasing, of course) over 50 years ago, actual evidence that both learning and memory activate the same population of neurons has largely been absent. However, new research out of the Hausser lab lends experimental support to this long-standing assumption, and also indicates that reactivation of just a fraction of these “memory neurons” is enough to conjure up full blown recall.

Bradley Monk
24 October 2009

G Protein-Coupled Receptors (GPCRs) are my favorite receptors in the whole wide world. Their versatility allows them to modulate a remarkable number of signaling pathways; environmental stimuli such as light, neurotransmission signals like acetylcholine, and hormonal stimuli such as adrenaline, all utilize GPCRs.

GPCRs are localized on plasma membranes and activated by extracellular ligands. However, recent studies have opened the door to the possibility that GPCRs exist and function INSIDE the cell -- HOW THE! -- is exactly what a group from Washington University in St. Louis (a.k.a. Wash-U) has been exploring...



Jeremy Biane
Published: 11 October 2009


BDNF - Waaay cooler than you

If there were a competition to determine the current biological “wonder molecule,” brain-derived neurotrophic factor, or BDNF, would have to be among the finalists. Found in the central nervous system, BDNF is important for neuronal growth and differentiation, and has been shown to stave off neurodegeneration in animal models of Alzheimers [1]. Additionally, BDNF appears to play a vital role in LTP and memory.

Back in 2007, Bekinschtein et al published an article in Neuron showing that maintenance of a recently acquired associative-learning task required BDNF synthesis 12 hours after learning [2]. That is, BDNF appeared to be necessary for consolidation of the memory, though not for its initial formation. But as the title of this post would indicate, this story can't all be about our hot little BDNF molecule. Dopamine has got to enter the picture somewhere, right?

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Annual Reviews just released their 2010 Neuroscience volume. Check it out here.

Also, I have it on good authority that there will be some pretty cool changes to the AR website in the near future; changes that will streamline the way you navigate through research articles. Be on the lookout!


And this site might change the way we review and discuss research. Check out The Third Reviewer website (Neuroscience journal club, improved. Convenient, fast, anonymous).


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Lateral Geniculate Nucleus is the primary processing center for visual information received from the retina of the eye. The LGN is found inside the thalamus of the brain, and is thus part of the central nervous system.

The LGN receives information directly from the ascending retinal ganglion cells via the optic tract and from the reticular activating system. Neurons of the LGN send their axons through the optic radiation, a pathway directly to the primary visual cortex (or V1), also known as the striate cortex. The primary visual cortex surrounds the calcarine fissure, a horizontal fissure in the medial and posterior occipital lobe. In addition, the LGN receives many strong feedback connections from the primary visual cortex. In mammals and humans the two strongest pathways linking the eye to the brain are those projecting to the LGNd (dorsal part of the LGN in the thalamus), and to the Superior Colliculus (SC)




Two-hybrid screening (also known as yeast two-hybrid system or Y2H) is a technique used to test if two proteins interact with each other. The assay makes use of a transcription factor that has been "cut in half" to separate the binding domain from the activating domain.
Overview of two-hybrid assay, checking for interactions between two proteins, called here Bait and Prey. Click for to enlarge the image
Typically, the binding domain of the transcription factor would attach to an upstream activation sequence on DNA, bringing the activating domain in close proximity to the promoter, allowing it to interact with the transcription machinery. We call the gene being transcribed the reporter gene because if it's actively being transcribed, it leads to the expression of a measurable protein. However, because the binding domain and the activating domain are separated in this type of assay, no transcription takes place. Unless...




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